Changelog

SIAMCAT 2.4

Minor changes

• Re-introduced the confidence interval from pROC
• Changed the tune call to prevent errors with mlr3tuning=1.18.0
• Minor changes to comply with the BioConductor coding style

SIAMCAT 2.2

Minor changes

• Fixed a bug in the LibLineaR classifier (the classifier was not exported correctly)

SIAMCAT 2.0

Major changes

• User visible: the check.association.plot function was split into check.association and association.plot or volcano.plot, respectively
• Switched from mlr to mlr3. This involved a lot of major changes internally, but should not affect the user experience too much
• Included support for regression tasks

SIAMCAT 1.12

Major changes

• New vignette about Machine learning meta-analysis
• New vignette about Example with confounding factors
• New vignette about Machine learning pitfalls

SIAMCAT 1.10

Major changes

• Include a section about confounder testing to the vignette

Minor changes

• Bugfixes in several functions

SIAMCAT 1.0.1

Major changes

• Constructor function has been changed quite extensively:
  • automatically runs validate.features in the beginning
  • inputs have to be named
  • more flexible label input
• Change in SIAMCAT object structure:
  • new slots for filtered and normalized data
  • new slots for assocation testing results
  • original feature slot has been deprecated
• Pipeline versatility has been increased:
  • almost every function takes as arguments on which type of feature it should operate (original, filtered, normalized)
• Deprecation of read.features and read.meta functions
• New vignettes and update of old vignettes
• New functions to read in data in specialized formats
• Additional plots for the check.confounders module