Retrieve the list of parameters for association testing from a SIAMCAT object

Function to retrieve the list of parameters for association testing

assoc_param(siamcat, verbose=1)

# S4 method for siamcat
assoc_param(siamcat, verbose = 1)

Arguments

siamcat

(Required). An instance of siamcat-class containing the results from association testing
verbose

integer, if the slot is empty, should a message be printed? values can be either 0 (no output) or 1 (print message)

Value

A list of parameters for association testing or NULL

Details

The function returns the list of parameters used in association testing. See check.associations for more details.

Examples

data(siamcat_example)
temp <- assoc_param(siamcat_example)
names(temp)
#> [1] "detect.lim"   "pr.cutoff"    "probs.fc"     "mult.corr"    "alpha"       
#> [6] "feature.type"