Function to retrieve the normalized features from a SIAMCAT object

get.norm_feat.matrix(siamcat)

Arguments

siamcat

(Required). An instance of siamcat-class containing normalized features

Value

A matrix containing the normalized features

Details

The function returns the normalized features as matrix. See normalize.features for more details.

Examples

data(siamcat_example) feat.norm <- get.norm_feat.matrix(siamcat_example) feat.norm[1:3, 1:3]
#> CCIS27304052ST-3-0 CCIS15794887ST-4-0 #> unclassified Fusobacterium [c:1482] 0.07470277 0.05137575 #> unclassified Fusobacterium [c:1481] 0.07470277 0.05137575 #> Pseudoflavonifractor capillosus [h:1579] 0.19537649 0.15983568 #> CCIS74726977ST-3-0 #> unclassified Fusobacterium [c:1482] 0.1143025 #> unclassified Fusobacterium [c:1481] 0.1371630 #> Pseudoflavonifractor capillosus [h:1579] 0.2057445