Retrieve a phyloseq-class object from object. — physeq • SIAMCAT

Retrieve a phyloseq-class object from object.

physeq(siamcat, verbose=1)

# S4 method for ANY
physeq(siamcat, verbose = 1)

# S4 method for phyloseq
physeq(siamcat)

Arguments

siamcat: (Required). An instance of siamcat-class that contains a label or instance of phyloseq-class.
verbose: If the slot is empty, should a message be printed? values can be either 0 (no output) or 1 (print message)

Value

The phyloseq-class object or NULL.

Examples

data(siamcat_example)
physeq(siamcat_example)
#> phyloseq-class experiment-level object
#> otu_table()   OTU Table:         [ 100 taxa and 141 samples ]
#> sample_data() Sample Data:       [ 141 samples by 5 sample variables ]