Function to retrieve the prediction matrix from a SIAMCAT object

pred_matrix(siamcat, verbose=1)

# S4 method for siamcat
pred_matrix(siamcat, verbose = 1)

Arguments

siamcat

(Required). A siamcat-class object that contains a prediction matrix

verbose

integer, if the slot is empty, should a message be printed? values can be either 0 (no output) or 1 (print message)

Value

A matrix containing predictions or NULL

Details

The functions returns a matrix containing the predictions for all samples across the different cross-validation repeats. See make.predictions for more information.

Examples

data(siamcat_example) temp <- pred_matrix(siamcat_example) head(temp)
#> CV_rep1 CV_rep2 #> CCIS27304052ST-3-0 0.012996378 4.018433e-05 #> CCIS15794887ST-4-0 0.028338574 2.510548e-01 #> CCIS74726977ST-3-0 0.760802351 9.849912e-01 #> CCIS16561622ST-4-0 0.008365059 6.470416e-02 #> CCIS79210440ST-3-0 0.170263425 2.269210e-01 #> CCIS82507866ST-3-0 0.062054480 6.437584e-05