Retrieve the prediction matrix from a SIAMCAT object

Function to retrieve the prediction matrix from a SIAMCAT object

pred_matrix(siamcat, verbose=1)

# S4 method for siamcat
pred_matrix(siamcat, verbose = 1)

Arguments

siamcat	(Required). A siamcat-class object that contains a prediction matrix
verbose	integer, if the slot is empty, should a message be printed? values can be either 0 (no output) or 1 (print message)

Value

A matrix containing predictions or NULL

Details

The functions returns a matrix containing the predictions for all samples across the different cross-validation repeats. See make.predictions for more information.

Examples

data(siamcat_example)
temp <- pred_matrix(siamcat_example)
head(temp)
#>                        CV_rep1      CV_rep2
#> CCIS27304052ST-3-0 0.012996378 4.018433e-05
#> CCIS15794887ST-4-0 0.028338574 2.510548e-01
#> CCIS74726977ST-3-0 0.760802351 9.849912e-01
#> CCIS16561622ST-4-0 0.008365059 6.470416e-02
#> CCIS79210440ST-3-0 0.170263425 2.269210e-01
#> CCIS82507866ST-3-0 0.062054480 6.437584e-05